Category: Sequence - Database Similarity Search

Programs:

• bestscor - Calculate the score of a 100% identical match
• blastcl3 - run BLAST remotely at NCBI
• fasta - Sequence database similarity
• fastf - compare mixed peptides to a protein database
• fastm - compare ordered peptides (or short DNA sequences) to a protein or DNA database
• fasts - compare unordered peptides to a protein database
• fastx - Database similarity - allow frameshifts between codons
• fasty - Database similarity - Allow frameshifts within codons
• relate - Statistical significance of database similarity
• ssearch - Rigorous Smith-Waterman database similarity search
• tfasta - Database similarity with translated DNA database
• tfastf - compare mixed peptides to a translated DNA database
• tfasts - compare unordered peptides to a translated DNA database
• tfastx - compare a protein to a DNA database, calculating similarities with frameshifts
• tfasty - compare a protein to a DNA database, calculating similarities with frameshifts